资源导航

1. BreakDancer: BreakDancer is an application for detecting structural rearrangements and indels in short read sequencing data BreakDancer, released under GPLv3, is a Cpp package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads. It include...; 标签：Genomics, Structural variation, InDel discovery
2. Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired end short reads. a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads a pattern growth approach to det...; 标签：InDel discovery, Structural variation
3. CLCbio Genomics Workbench: De novo and reference assembly SNP and small indel detection and annotation.; 标签：Genomics, Whole Genome Resequencing, De-novo assembly, SNP discovery, InDel discovery, ChIP-Seq, RNA-Seq,MiRNA, Transcriptomics
4. SeqMan NGen: Sequence assembly software using traditional, next-gen, and third-gen techonologies. Subsequent analysis of the assembly, including SNP discovery, coverage evaluation and consensus annotation is provided through full integration with Lasergene.; 标签：Genomics, De-novo assembly, De novo transcriptome assembly,Whole Genome Resequencing, SNP discovery, InDel discovery,ChIP-Seq, RNA-Seq Alignment
5. Syzygy: Software to identify variants from pooled sequencing data; 标签：SNP discovery, InDel discovery
6. Trans-ABySS: Trans-ABySS is a software package that is designed to analyze ABySS-assembled whole-genome shotgun transcriptome data.; 标签：RNA-Seq, SNP discovery, Fusion genes, InDel discovery, Fusion transcripts
7. Dindel: Calls small indels from short-read sequence data; 标签：InDel discovery
8. MoDIL: Program to detect small indels in next generation sequencing data; 标签：Genomics, InDel discovery
9. NovelSeq: A computational framework to discover the content and location of long novel sequence insertions using paired-end sequencing data; 标签：Structural variation, InDel discovery
10. VAAL: VAAL is a variant ascertainment algorithm that can be used to detect SNPs, indels, and more complex genetic variants.; 标签：Structural variation, SNP discovery, InDel discovery
11. Omixon Variant Toolkit: Omixon Target Standard, Target HLA and Target Pro are designed to help clinical, diagnostic and research labs to efficiently get the maximum accuracy and precision from their targeted NGS data.; 标签：Comparative genomics, Mapping,Sequence analysis, Read alignment, InDel discovery,SNP discovery
12. SPLINTER: Identification of indel variants in pooled DNA with spike-in controls; 标签：InDel discovery, SNP discovery
13. SRMA: SRMA is a short read micro re-aligner for next-generation high throughput sequencing data.; 标签：SNP discovery, InDel discovery
14. Lasergene: Lasergene is a comprehensive DNA and protein sequence analysis software suite comprised of seven applications which include functions ranging from sequence assembly and SNP detection, to automated virtual cloning and primer design.; 标签：Alignment, De novo sequencing,De-novo assembly, Genomics,InDel discovery, Integrated solution, Mapping,Phylogenetics, Protein structure analysis, Read alignment, SNP discovery,Sequence analysis,Transcription Factor Binding Site identification
15. Atlas Suite: Atlas is a suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequecing (WECS) data. SNPs may be called using the Atlas-SNP2 application and indels may be called usin...; 标签：SNP discovery, InDel discovery
16. ECHO: Reference-free short read error correction from diploid genomes, with explicit modeling of heterozygous sites.; 标签：SNP discovery, InDel discovery
17. GAMES: GAMES (Genomic Analysis of Mutations Extracted by Sequencing) is a tool for mining and prediction of functional effect of mutation.; 标签：SNP discovery, SNP Annotation,InDel discovery
18. PiCall: Identifies short indel polymorphisms in population sequencing data; 标签：InDel discovery, Population genetics
19. VARiD: VARiD is a variation detection framework for both color-space and letter-space platforms; 标签：Genomics, SNP discovery, InDel discovery
20. Breakpointer: Breakpointer is a fast tool for locating sequence breakpoints from the alignment of single end reads (SE) produced by next generation sequencing (NGS). It adopts a heuristic method in searching for local mapping signatures created by insertion/deletions (indels) or more complex structur...; 标签：Exome and Whole genome variant detection, InDel discovery

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